About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20171712_20172200_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20171712 - 20172200
Intron Length:
489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TACTTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ATACTGTTAATA
Flanking Amino Acid:
FPTRILKSYSVIEVIIGISS
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
80
0.75
1
78.6
31
Major PPT
78.5
0.64
0.9
77.1
36.8
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
50.5
0.01
2
63.61
36.7

Associated Gene:

Gene:
MLC1
Ensembl Gene ID:
ENSAPLG00000016154
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016862
20165113 - 20182656
17544
ENSAPLT00000034625
20165113 - 20183258
18146
ENSAPLT00000033055
20165113 - 20182656
17544
ENSAPLT00000026583
20165113 - 20182875
17763