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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20172273_20173293_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20172273 - 20173293
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTACC
5'SS Class:
major
3'SS Sequence:
TATTCCCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTCTCAATC
Flanking Amino Acid:
STEDCCMRKKNTAYDNTIVT
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.7
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.1
0.59
0.8
67.5
34.8
Minor 5ss
37.3
-1.4
3
46.6
35.6
Minor BPS
67.7
0.53
1.5
75.08
35.4

Associated Gene:

Gene:
MLC1
Ensembl Gene ID:
ENSAPLG00000016154
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026583
20165113 - 20182875
17763
ENSAPLT00000016862
20165113 - 20182656
17544
ENSAPLT00000034625
20165113 - 20183258
18146
ENSAPLT00000033055
20165113 - 20182656
17544