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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201758539_201759945_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201758539 - 201759945
Intron Length:
1407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTATTAATT
Flanking Amino Acid:
CTEKQCNGKGVCNNKKNCHC
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79
0.65
0.8
70.9
40
Minor 5ss
34.7
-1.7
2.6
34.1
41.4
Minor BPS
71.8
0.76
1.5
86.09
33.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005311
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039737
201749158 - 201762873
13716
ENSAPLT00000005526
201749158 - 201764321
15164