Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201762742_201764282_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201762742 - 201764282

Intron Length:

1541

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

ATTGCGCTGACA

Flanking Amino Acid:

RRATTPSSKEDSLAEADRSP

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

98.4

1.14

0.6

94.3

17.7

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

93.8

0.99

0.6

92.5

25.7

Minor 5ss

38.6

-1.3

3.4

57.8

46.8

Minor BPS

46.2

-0.3

2.4

65.37

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005311

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005526

201749158 - 201764321

15164