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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201765382_201766023_R

Intron Information:

Intron Rank:
141256
Intron Class:
major
Intron Phase:
Intron Coordinates:
201765382 - 201766023
Intron Length:
642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGGGTA
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAA
U12 Branch Point Sequence:
CAACAGTTAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.3
65.7
40.1
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
89.8
0.9
0.6
89.2
19.6
Minor 5ss
34.3
-1.8
3.5
46.7
48.7
Minor BPS
40.6
-0.8
2.2
41.53
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023340
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029475
201765353 - 201768001
2649
ENSAPLT00000044165
201765353 - 201766828
1476