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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201766196_201766717_R

Intron Information:

Intron Rank:
141257
Intron Class:
major
Intron Phase:
Intron Coordinates:
201766196 - 201766717
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTGTATTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
75.1
0.57
1
65.4
45
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
63.7
0.43
1.7
75.76
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023340
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029475
201765353 - 201768001
2649