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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201777897_201778440_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201777897 - 201778440
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTCTACA
Flanking Amino Acid:
CFHLLKLYSDRHYDLDHLLD
Intron Amino Acid Position:
1345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
67.3
44.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
93.1
0.97
0.6
88.4
21.4
Minor 5ss
31
-2.2
3.3
40.6
45.6
Minor BPS
63
0.4
1.9
79.36
36.5

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012679
201776207 - 201804275
28069
ENSAPLT00000042210
201776207 - 201804275
28069
ENSAPLT00000018106
201776207 - 201804275
28069