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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201778584_201779646_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201778584 - 201779646
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
ACTATTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTGTCTTTAAAC
Flanking Amino Acid:
ALAMYESAFQNTPESEKYAC
Intron Amino Acid Position:
1298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
71.3
0.48
1
69.8
40.8
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
75.4
0.78
1.3
79.44
35.7

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042210
201776207 - 201804275
28069
ENSAPLT00000018106
201776207 - 201804275
28069
ENSAPLT00000012679
201776207 - 201804275
28069