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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201779791_201780035_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201779791 - 201780035
Intron Length:
245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTTATTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
CAGTTCGTAATT
Flanking Amino Acid:
RIFALLAGKPVWQLSERVSI
Intron Amino Acid Position:
1250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
74.8
36
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
86.3
0.82
0.7
85.7
28.8
Minor 5ss
45.8
-0.4
2.8
69.7
40.4
Minor BPS
51.5
0.13
2
67.88
43.8

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012679
201776207 - 201804275
28069
ENSAPLT00000042210
201776207 - 201804275
28069
ENSAPLT00000018106
201776207 - 201804275
28069