Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201781045_201781337_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201781045 - 201781337

Intron Length:

293

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTACTCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTTAT

U12 Branch Point Sequence:

TAACTCTGTACT

Flanking Amino Acid:

KASEDPAVTETVVKHWCLTW

Intron Amino Acid Position:

1107

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

0.9

84.1

26.4

Major BPS

78.8

0.72

67.9

40.1

Major PPT

75.7

0.58

0.9

36.1

Minor 5ss

34.9

-1.7

3.4

49.4

41.3

Minor BPS

49.1

0.01

1.8

68.44

41.7

Associated Gene:

Gene:

NUP98

Ensembl Gene ID:

ENSAPLG00000012135

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042210

201776207 - 201804275

28069

ENSAPLT00000018106

201776207 - 201804275

28069

ENSAPLT00000012679

201776207 - 201804275

28069