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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201782628_201783427_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201782628 - 201783427
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGTGG
5'SS Class:
major
3'SS Sequence:
TTCTTCCTCCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTCATTTAAAT
Flanking Amino Acid:
SKAHGQKRCSVGGLLQSKFA
Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
55.9
43.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
80
0.68
0.7
73.6
31.5
Minor 5ss
42.3
-0.9
3.1
56
48.2
Minor BPS
61.4
0.44
1.6
78.56
36.8

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042210
201776207 - 201804275
28069
ENSAPLT00000018106
201776207 - 201804275
28069
ENSAPLT00000012679
201776207 - 201804275
28069