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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201783582_201784321_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201783582 - 201784321
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGTC
5'SS Class:
major
3'SS Sequence:
CTCACCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GACTTCTCACCT
Flanking Amino Acid:
TLGINPHVLQIMKASLLADE
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.6
39.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.6
0.51
0.8
69.7
31
Minor 5ss
34.1
-1.8
3.7
48.7
47.8
Minor BPS
49.2
0.02
1.8
65.67
44.7

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012679
201776207 - 201804275
28069
ENSAPLT00000018106
201776207 - 201804275
28069