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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201783582_201788451_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201783582 - 201788451
Intron Length:
4870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAAGGA
5'SS Class:
major
3'SS Sequence:
CTCACCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
GACTTCTCACCT
Flanking Amino Acid:
LNGKPTPPSQIMKASLLADE
Intron Amino Acid Position:
780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
59.4
40
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.6
0.51
0.8
69.7
31
Minor 5ss
27.8
-2.6
3.6
38.3
46.7
Minor BPS
49.2
0.02
1.8
65.67
44.7

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042210
201776207 - 201804275
28069