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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201790315_201791412_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201790315 - 201791412
Intron Length:
1098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGCTTG
5'SS Class:
major
3'SS Sequence:
ATTTCCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTGACA
Flanking Amino Acid:
SETMHHVHPAGIVLTRAGYY
Intron Amino Acid Position:
581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.2
70.9
41.9
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
77.2
0.61
0.8
71.5
33.5
Minor 5ss
43.8
-0.7
2.8
56.2
48
Minor BPS
70.7
0.64
1.6
79.83
36

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012679
201776207 - 201804275
28069
ENSAPLT00000042210
201776207 - 201804275
28069
ENSAPLT00000018106
201776207 - 201804275
28069