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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201791718_201792198_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201791718 - 201792198
Intron Length:
481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGA
5'SS Class:
major
3'SS Sequence:
GTTTTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
AACAATTGAATT
Flanking Amino Acid:
SPSEYPENGDRFFLSVPSDE
Intron Amino Acid Position:
479

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.8
41.3
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
86.4
0.82
0.7
85.6
29.2
Minor 5ss
35
-1.7
3.4
47.2
48.2
Minor BPS
46.6
-0.1
1.6
58.25
38.6

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012679
201776207 - 201804275
28069
ENSAPLT00000042210
201776207 - 201804275
28069
ENSAPLT00000018106
201776207 - 201804275
28069