Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201792316_201793563_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201792316 - 201793563

Intron Length:

1248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTTAGTGTT

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTTT

U12 Branch Point Sequence:

TTTTTTTTTTTT

Flanking Amino Acid:

PSLSNGAFMPKKSIKKLVLK

Intron Amino Acid Position:

440

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.9

0.61

1.1

80.1

32.8

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

36.7

-1.5

3.3

51.4

39.2

Minor BPS

43.9

-0.3

3.5

78.47

38.5

Associated Gene:

Gene:

NUP98

Ensembl Gene ID:

ENSAPLG00000012135

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042210

201776207 - 201804275

28069

ENSAPLT00000018106

201776207 - 201804275

28069

ENSAPLT00000012679

201776207 - 201804275

28069