About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201799960_201800588_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201799960 - 201800588
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTATGTCCA
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GGATTTCAAATT
Flanking Amino Acid:
TNTGFGVGGSTLFGSKPAGF
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
64.6
41.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
41.1
-1
2.7
51.6
44.8
Minor BPS
44.3
-0.3
1.8
58.3
39

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042210
201776207 - 201804275
28069
ENSAPLT00000012679
201776207 - 201804275
28069