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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201799960_201801477_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201799960 - 201801477
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GGATTTCAAATT
Flanking Amino Acid:
TLGQPNTNTMTLFGSKPAGF
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
76.9
31.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
34.2
-1.8
3.5
44.1
44.7
Minor BPS
44.3
-0.3
1.8
58.3
39

Associated Gene:

Gene:
NUP98
Ensembl Gene ID:
ENSAPLG00000012135
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018106
201776207 - 201804275
28069