Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201845944_201867614_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201845944 - 201867614

Intron Length:

21671

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGAAGG

5'SS Class:

strong_major

3'SS Sequence:

TCTCCCTCAGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATCAC

U12 Branch Point Sequence:

TCTCCCTCAGCA

Flanking Amino Acid:

PLTQRQVAQREFCRIDKPLC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

71.5

40.2

Major BPS

56.9

0.17

1.1

59.7

36.1

Major PPT

74.5

0.55

0.8

70.4

Minor 5ss

27.4

-2.6

2.7

31.3

42.4

Minor BPS

56.1

0.19

1.8

69.44

42.6

Associated Gene:

Gene:

STIM1

Ensembl Gene ID:

ENSAPLG00000013672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025643

201845766 - 201913191

67426