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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201867746_201874689_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201867746 - 201874689
Intron Length:
6944

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTCGTACT
5'SS Class:
major
3'SS Sequence:
CTTCTTCTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
AATCGAATAATA
Flanking Amino Acid:
GNVDVEESDEFLREDLNYHD
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
76.7
38.3
Major BPS
80
0.75
1
78.6
31
Major PPT
79.6
0.67
0.7
73.1
31.8
Minor 5ss
33.7
-1.9
2.8
44.5
42.7
Minor BPS
42.7
-0.5
2.1
55.07
37

Associated Gene:

Gene:
STIM1
Ensembl Gene ID:
ENSAPLG00000013672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014268
201867542 - 201912034
44493
ENSAPLT00000035670
201859154 - 201913191
54038
ENSAPLT00000030614
201867584 - 201907526
39943
ENSAPLT00000048058
201867542 - 201913191
45650
ENSAPLT00000025643
201845766 - 201913191
67426
ENSAPLT00000041658
201867490 - 201913191
45702
ENSAPLT00000021480
201867584 - 201912191
44608
ENSAPLT00000039070
201867542 - 201913191
45650