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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201878269_201879528_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201878269 - 201879528
Intron Length:
1260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAGAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
KLQLSGHAMPRLAVNNATMM
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1.2
78.8
35.5
Major BPS
74.1
0.6
1
69
38.9
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
30.7
-2.2
3.1
42.2
44.4
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
STIM1
Ensembl Gene ID:
ENSAPLG00000013672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014268
201867542 - 201912034
44493
ENSAPLT00000035670
201859154 - 201913191
54038
ENSAPLT00000030614
201867584 - 201907526
39943
ENSAPLT00000048058
201867542 - 201913191
45650
ENSAPLT00000025643
201845766 - 201913191
67426
ENSAPLT00000041658
201867490 - 201913191
45702
ENSAPLT00000021480
201867584 - 201912191
44608
ENSAPLT00000039070
201867542 - 201913191
45650