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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201889873_201893918_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201889873 - 201893918
Intron Length:
4046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGCAC
U12 Branch Point Sequence:
GTGCACAGCACT
Flanking Amino Acid:
AEQSLHDLQERLQKAQEEHR
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
50
-0
1.5
63.1
44.5
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
39.4
-0.7
2.1
57.63
44.1

Associated Gene:

Gene:
STIM1
Ensembl Gene ID:
ENSAPLG00000013672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014268
201867542 - 201912034
44493
ENSAPLT00000035670
201859154 - 201913191
54038
ENSAPLT00000030614
201867584 - 201907526
39943
ENSAPLT00000048058
201867542 - 201913191
45650
ENSAPLT00000025643
201845766 - 201913191
67426
ENSAPLT00000041658
201867490 - 201913191
45702
ENSAPLT00000021480
201867584 - 201912191
44608
ENSAPLT00000039070
201867542 - 201913191
45650