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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201898024_201899230_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201898024 - 201899230
Intron Length:
1207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGGATT
5'SS Class:
major
3'SS Sequence:
GTTAATGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTCTGTTAATG
Flanking Amino Acid:
EKQLLVAKEGAEKIKKKRNT
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
78.6
37.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
72.3
0.5
1.1
61.9
48.1
Minor 5ss
32.3
-2
3.3
40.3
45.6
Minor BPS
56.5
0.07
2.1
68.07
40.1

Associated Gene:

Gene:
STIM1
Ensembl Gene ID:
ENSAPLG00000013672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025643
201845766 - 201913191
67426
ENSAPLT00000041658
201867490 - 201913191
45702
ENSAPLT00000021480
201867584 - 201912191
44608
ENSAPLT00000039070
201867542 - 201913191
45650
ENSAPLT00000014268
201867542 - 201912034
44493
ENSAPLT00000035670
201859154 - 201913191
54038
ENSAPLT00000030614
201867584 - 201907526
39943
ENSAPLT00000048058
201867542 - 201913191
45650