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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201899332_201899771_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201899332 - 201899771
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TTCTCTTTGACC
Flanking Amino Acid:
DDVDHKILTAKQALSEVTAA
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
84.1
26.4
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
79.3
0.66
0.8
75.9
32.7
Minor 5ss
36.6
-1.5
2.9
46.1
36.1
Minor BPS
78.4
0.88
1.1
81.39
33.4

Associated Gene:

Gene:
STIM1
Ensembl Gene ID:
ENSAPLG00000013672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030614
201867584 - 201907526
39943
ENSAPLT00000048058
201867542 - 201913191
45650
ENSAPLT00000025643
201845766 - 201913191
67426
ENSAPLT00000041658
201867490 - 201913191
45702
ENSAPLT00000021480
201867584 - 201912191
44608
ENSAPLT00000039070
201867542 - 201913191
45650
ENSAPLT00000014268
201867542 - 201912034
44493
ENSAPLT00000035670
201859154 - 201913191
54038