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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201901931_201904825_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
201901931 - 201904825
Intron Length:
2895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTTTGGTTC
5'SS Class:
weak_major
3'SS Sequence:
TCTCTCGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAG
U12 Branch Point Sequence:
GCTGCCTTCAGC
Flanking Amino Acid:
SEDQSLWKYPAPALPSTVRQ
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
59
40.7
Major BPS
60.8
0.27
1.6
71.4
45.1
Major PPT
82
0.72
0.8
76.3
32.2
Minor 5ss
44.2
-0.6
3.1
60.7
44.1
Minor BPS
47.8
-0.1
2.2
58.37
46.7

Associated Gene:

Gene:
STIM1
Ensembl Gene ID:
ENSAPLG00000013672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041658
201867490 - 201913191
45702
ENSAPLT00000035670
201859154 - 201913191
54038
ENSAPLT00000025643
201845766 - 201913191
67426
ENSAPLT00000048058
201867542 - 201913191
45650