Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201904893_201907618_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

201904893 - 201907618

Intron Length:

2726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTGGTAGA

5'SS Class:

major

3'SS Sequence:

CAATTGGCTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAA

U12 Branch Point Sequence:

TCTTTTGCAATT

Flanking Amino Acid:

VDPQHAHGSQRGSGANKRLN

Intron Amino Acid Position:

492

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.1

0.57

1.2

70.1

Major BPS

65.8

0.39

1.4

77.7

37.1

Major PPT

66.8

0.38

62.1

43.9

Minor 5ss

30.1

-2.3

2.7

34.4

41.1

Minor BPS

-0

2.1

70.72

41.5

Associated Gene:

Gene:

STIM1

Ensembl Gene ID:

ENSAPLG00000013672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014268

201867542 - 201912034

44493