Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201905217_201911641_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

201905217 - 201911641

Intron Length:

6425

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATATTTT

5'SS Class:

weak_major

3'SS Sequence:

TTTCAACCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

CGCCTTTCAACC

Flanking Amino Acid:

SGVRCRAESFGDLTRCDSES

Intron Amino Acid Position:

600

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

1.1

73.8

37.5

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

72.7

0.51

0.9

63.2

38.2

Minor 5ss

54.1

0.14

2.5

66.4

45.1

Minor BPS

47.9

-0.1

1.5

51.9

39.6

Associated Gene:

Gene:

STIM1

Ensembl Gene ID:

ENSAPLG00000013672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048058

201867542 - 201913191

45650

ENSAPLT00000039070

201867542 - 201913191

45650