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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201919023_201919115_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
201919023 - 201919115
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGCGGGAC
5'SS Class:
major
3'SS Sequence:
CTGCTCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGCCCCTGACCC
Flanking Amino Acid:
CPAQTRVLAAGVFLIPYFIL
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.1
54.6
38.9
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
74
0.54
0.8
65.3
36.2
Minor 5ss
22.6
-3.2
3.4
22.5
38
Minor BPS
50
-0
1.8
61.68
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015156
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015804
201915448 - 201919386
3939