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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201941193_201942235_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201941193 - 201942235
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ACAGTTTTTACT
Flanking Amino Acid:
EIVEYTSKDEVAVCNLASIA
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
87
0.83
0.7
80.6
31.4
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
48.4
-0
1.7
61.73
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030799
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019515
201939990 - 201948905
8916