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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201943516_201943945_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201943516 - 201943945
Intron Length:
430

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTGTGTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CCCTATCTAATT
Flanking Amino Acid:
TYEGSPVSKGILQYDMWNVT
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
72.6
37.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.6
0.76
0.8
81.3
36.4
Minor 5ss
38.3
-1.3
2.7
43.9
37
Minor BPS
47.1
-0.1
1.8
60.6
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030799
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019515
201939990 - 201948905
8916