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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201944023_201944864_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
201944023 - 201944864
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTATCATTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CACCTCTTGACT
Flanking Amino Acid:
DWKALKEKIAKYGVRNSLLI
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.9
0.33
1
58.7
41.9
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
61.1
0.43
1.3
68.82
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030799
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019515
201939990 - 201948905
8916