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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201945001_201946240_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201945001 - 201946240
Intron Length:
1240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATATAT
U12 Branch Point Sequence:
TTGCTCTTTACA
Flanking Amino Acid:
TRRVLSGEFQVVNPHLLKDL
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
62.6
0.31
1
59.1
37.6
Major PPT
85.5
0.8
0.8
79.9
32.1
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
62.4
0.38
1.6
72.36
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030799
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019515
201939990 - 201948905
8916