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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_201946337_201947161_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
201946337 - 201947161
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
TTACACTACATT
Flanking Amino Acid:
QIIAHNGSIQNISEIPDDLK
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
82.3
0.73
0.8
81.2
30.9
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
44.9
-0.3
2.2
67.18
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030799
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019515
201939990 - 201948905
8916