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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20195322_20195702_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20195322 - 20195702
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTCACATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTGCAATTAACT
Flanking Amino Acid:
MEDVCEGFKPYVGDLV
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
70.5
41.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
69.7
0.44
0.9
65.6
35.2
Minor 5ss
35.8
-1.6
2.6
42
44.7
Minor BPS
60.5
0.41
1.8
80.2
40.9

Associated Gene:

Gene:
MOV10L1
Ensembl Gene ID:
ENSAPLG00000002129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002127
20195303 - 20223790
28488