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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20195816_20196732_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20195816 - 20196732
Intron Length:
917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGTT
5'SS Class:
strong_major
3'SS Sequence:
CAACCTGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
ACCTACTTAACA
Flanking Amino Acid:
KPLRYKRVDKVRVSSVCGRN
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
78.6
35.9
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
67.7
0.4
1
57.4
42.7
Minor 5ss
41.6
-0.9
3.6
64.1
47.4
Minor BPS
67.9
0.56
1.5
70.63
41.5

Associated Gene:

Gene:
MOV10L1
Ensembl Gene ID:
ENSAPLG00000002129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002127
20195303 - 20223790
28488