About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20196924_20198778_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20196924 - 20198778
Intron Length:
1855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAACATTC
5'SS Class:
major
3'SS Sequence:
AATCTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
ACTACATAAAAT
Flanking Amino Acid:
ALCLAPVDQKGQSHSNPIDL
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.2
66.9
40
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
80.2
0.68
0.9
73.2
36.3
Minor 5ss
47.6
-0.2
2.9
60
44.7
Minor BPS
46.9
-0.1
2
65.79
44.1

Associated Gene:

Gene:
MOV10L1
Ensembl Gene ID:
ENSAPLG00000002129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002127
20195303 - 20223790
28488