About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20200623_20200750_F


Intron Information:

Intron Rank:
5

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
20200623 - 20200750

Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACAGTGA

5'SS Class:
major

3'SS Sequence:
ATGTTTCCTGCAG|A

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTGTTAT

U12 Branch Point Sequence:
CAATCCTGATAA

Flanking Amino Acid:
ACVTKNGVISDENSPQERNL

Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70.1
0.47
1.1
60.1
41.3

Major BPS
81.3
0.78
1.1
71.7
44.6

Major PPT
80.3
0.68
0.9
74.5
35.8

Minor 5ss
34.4
-1.8
3.5
47.2
48.2

Minor BPS
47.5
-0.1
1.8
56.04
42.2

Associated Gene:

Gene:
MOV10L1

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

20195303 - 20223790
28488