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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20200947_20202863_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20200947 - 20202863
Intron Length:
1917

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TGCTTGCTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
AAGAACTTAACT
Flanking Amino Acid:
KTSVVIICTAVNPGYSKELL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.2
74.7
41.5
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
67.8
0.4
1.1
67.5
38.2
Minor 5ss
42.3
-0.9
3.2
60.3
44.3
Minor BPS
63
0.49
1.6
73.97
42

Associated Gene:

Gene:
MOV10L1
Ensembl Gene ID:
ENSAPLG00000002129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002127
20195303 - 20223790
28488