Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202016011_202019390_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

202016011 - 202019390

Intron Length:

3380

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGG|GCAATTAGC

5'SS Class:

major

3'SS Sequence:

TATCAGCCTTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTCAA

U12 Branch Point Sequence:

CTTCTATCAGCC

Flanking Amino Acid:

VSSLAFLMMGIPGL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.6

0.51

1.3

72.9

40.7

Major BPS

74.2

0.6

0.9

75.7

Major PPT

71.9

0.49

0.9

66.7

39.9

Minor 5ss

25.4

-2.8

3.6

28.6

35.9

Minor BPS

44.1

-0.4

1.9

57.09

41.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000000832

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000000806

202015998 - 202022382

6385