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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202027919_202032085_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
202027919 - 202032085
Intron Length:
4167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGACTTCT
5'SS Class:
weak_major
3'SS Sequence:
CTTTTGTGTTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TGTTCCTTATTT
Flanking Amino Acid:
LIHISSNRTAQEKLIKKNE*
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.2
62.5
38.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
59.6
0.22
1.8
72.6
42.4
Minor 5ss
45.1
-0.5
2.8
64.7
40.4
Minor BPS
75.6
0.88
1.5
88.81
36.2

Associated Gene:

Gene:
OR51E2
Ensembl Gene ID:
ENSAPLG00000000823
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000797
202026966 - 202032113
5148