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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20203059_20203741_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20203059 - 20203741
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTGA
5'SS Class:
major
3'SS Sequence:
GTTCTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAC
U12 Branch Point Sequence:
AATGATTTGACA
Flanking Amino Acid:
TTTVVAPIFKRNNRKLPSFL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
59.6
41.8
Major BPS
77.7
0.69
0.9
69.1
37.9
Major PPT
83.1
0.74
0.9
80.5
37
Minor 5ss
35.1
-1.7
3.4
47.8
47.7
Minor BPS
52.2
0.06
1.6
62.16
37.8

Associated Gene:

Gene:
MOV10L1
Ensembl Gene ID:
ENSAPLG00000002129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002127
20195303 - 20223790
28488