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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20203854_20205295_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20203854 - 20205295
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGAAAT
U12 Branch Point Sequence:
GAAATTGCAACT
Flanking Amino Acid:
VLTFQPLLAEGLNINNYKAK
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.6
41.3
Major BPS
59.4
0.23
1.2
65.3
38.6
Major PPT
86.7
0.83
0.7
84.4
30.6
Minor 5ss
44.8
-0.6
2.6
56.4
48
Minor BPS
41.8
-0.5
2
55.47
40.2

Associated Gene:

Gene:
MOV10L1
Ensembl Gene ID:
ENSAPLG00000002129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002127
20195303 - 20223790
28488