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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202050189_202050300_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
202050189 - 202050300
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TCCCCCTTTCTC
Flanking Amino Acid:
VADCGAEALARLLIVYPWTQ
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.3
40.1
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
89.7
0.89
0.6
85.1
22.4
Minor 5ss
39.1
-1.2
3
49.9
46.5
Minor BPS
39
-0.8
3.5
55.46
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022038
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047771
202048682 - 202051615
2934
ENSAPLT00000031586
202042459 - 202051615
9157