Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202052478_202053224_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

202052478 - 202053224

Intron Length:

747

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCTGC

5'SS Class:

major

3'SS Sequence:

CCTCCACCGCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTGAC

U12 Branch Point Sequence:

CCTCCCTCCACC

Flanking Amino Acid:

KLHVDPENFRLLGDILIIVL

Intron Amino Acid Position:

145

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.3

0.57

60.1

41.9

Major BPS

49.4

-0

1.3

42.8

41.8

Major PPT

62.8

0.29

54.6

35.5

Minor 5ss

38.3

-1.3

41.6

45.3

Minor BPS

48.6

-0.1

59.91

45.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023947

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029687

202052245 - 202053658

1414