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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202096931_202097553_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
202096931 - 202097553
Intron Length:
623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGACAT
U12 Branch Point Sequence:
ACATCCCCAGCT
Flanking Amino Acid:
PGPEGTLHGQCAPWKDNACC
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
51
0.03
1.1
58.7
38.1
Major PPT
82.4
0.73
0.9
76.8
37.3
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
46
-0.2
2.1
64.78
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038577
202096583 - 202102182
5600
ENSAPLT00000026263
202096793 - 202098105
1313
ENSAPLT00000048250
202094907 - 202101828
6922
ENSAPLT00000003575
202096239 - 202101828
5590
ENSAPLT00000043262
202096125 - 202102182
6058