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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202097876_202098001_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
202097876 - 202098001
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTGATGGA
5'SS Class:
major
3'SS Sequence:
GGGATCACACCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTGCAC
U12 Branch Point Sequence:
GGAGCTGGAACA
Flanking Amino Acid:
HLHLSYWVWTGLCLLLSSAG
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.9
0.42
1.3
60.4
41
Major BPS
52.5
0.06
1.4
65.3
41.6
Major PPT
52.1
0.05
1.1
41.7
42.9
Minor 5ss
16
-3.9
3.6
23.4
37.1
Minor BPS
42.7
-0.5
2.1
50.49
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003503
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026263
202096793 - 202098105
1313