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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20212097_20213030_F

Intron Information:

Intron Rank:
14
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
20212097 - 20213030
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGCTTT
5'SS Class:
weak_major
3'SS Sequence:
ATCTTGATCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATCTTGATCA
Flanking Amino Acid:
VTVPAQTSQLVDETVALKQR
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
73.2
38.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
68.1
0.41
0.9
62
38.1
Minor 5ss
71
0.71
2.2
78.5
38.4
Minor BPS
60.1
0.31
1.7
73.18
38.5

Associated Gene:

Gene:
MOV10L1
Ensembl Gene ID:
ENSAPLG00000002129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002127
20195303 - 20223790
28488