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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202127303_202127425_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
202127303 - 202127425
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTATAGGT
5'SS Class:
major
3'SS Sequence:
GCATCCCAGAGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGATTTGTAAGA
Flanking Amino Acid:
KLVCADITFNRASQGISSPI
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.2
63.9
40.5
Major BPS
84.6
0.86
1
74
41.2
Major PPT
43.7
-0.3
1.7
42.7
37.6
Minor 5ss
28.6
-2.5
3.2
40.3
45.2
Minor BPS
46.4
-0.2
2.2
59.83
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015040
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015665
202126726 - 202132713
5988