About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_20213851_20214225_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20213851 - 20214225
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
TTTTACAAAACA
Flanking Amino Acid:
RINASCRSPEQIDDIVKPYC
Intron Amino Acid Position:
717

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
89.5
0.89
0.7
85
29.8
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
55.4
0.17
2.1
77.56
38.9

Associated Gene:

Gene:
MOV10L1
Ensembl Gene ID:
ENSAPLG00000002129
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002127
20195303 - 20223790
28488