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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_202169553_202169834_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
202169553 - 202169834
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGCCG
5'SS Class:
major
3'SS Sequence:
TGTGCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCGTGAT
U12 Branch Point Sequence:
CCCTTCGTGATG
Flanking Amino Acid:
MADTQTERAYQKQPT
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
54
44.7
Major BPS
68.7
0.46
1.3
59.3
47.1
Major PPT
69.8
0.45
0.9
62.5
34.6
Minor 5ss
24.2
-3
3.2
29.7
43.3
Minor BPS
44.3
-0.5
2
44.43
43

Associated Gene:

Gene:
RPS11
Ensembl Gene ID:
ENSAPLG00000010997
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019886
202169538 - 202220893
51356
ENSAPLT00000011443
202169538 - 202171392
1855
ENSAPLT00000026347
202169538 - 202221102
51565